MRIQC: individual T1w report

Summary

Subject ID: 014_ControlPre.
Date and time: 2018-05-06, 21:40.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2722076737141064
cnr			4.645146122379485
efc			0.5649756877944814
fber			95.2838363647461
fwhm	avg		3.7958233333333333
fwhm	x		3.67904
fwhm	y		4.02479
fwhm	z		3.68364
icvs	csf		0.2022370744764943
icvs	gm		0.46321691430403267
icvs	wm		0.334546011219473
inu	med		1.1219723224639893
inu	range		0.327939224243164
qi	1		0.0
qi	2		0.0007390411446331779
rpve	csf		29.33756889045947
rpve	gm		14.298433842278271
rpve	wm		22.868661810451588
size	x		180
size	y		256
size	z		256
snr	csf		2.4537864862974565
snr	gm		10.394378603925764
snr	total		10.556051648786491
snr	wm		18.819989856136253
snrd	csf		13.756204772938155
snrd	gm		31.012774027308833
snrd	total		31.52598952112382
snrd	wm		49.80898976312447
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.9445973236201719
summary	bg	mad	13.153180122375488
summary	bg	mean	49.8298454284668
summary	bg	median	48.599735260009766
summary	bg	n	2936683.0
summary	bg	p05	30.064423179626466
summary	bg	p95	73.98093795776366
summary	bg	stdv	13.726670265197754
summary	csf	k	-0.07861302309525486
summary	csf	mad	126.40147399902344
summary	csf	mean	281.444091796875
summary	csf	median	276.1834716796875
summary	csf	n	8122.0
summary	csf	p05	111.48371505737305
summary	csf	p95	465.75429687499997
summary	csf	stdv	112.54706573486328
summary	gm	k	0.2355882602283863
summary	gm	mad	57.830718994140625
summary	gm	mean	623.3633422851562
summary	gm	median	622.643798828125
summary	gm	n	29727.0
summary	gm	p05	525.7082946777343
summary	gm	p95	724.4738586425781
summary	gm	stdv	59.90096664428711
summary	wm	k	1.4170340838813429
summary	wm	mad	44.89278793334961
summary	wm	mean	996.3038940429688
summary	wm	median	1000.015625
summary	wm	n	142606.0
summary	wm	p05	899.0380554199219
summary	wm	p95	1075.140380859375
summary	wm	stdv	53.13563537597656
tpm	overlap	csf	0.2217210829257965
tpm	overlap	gm	0.5399011373519897
tpm	overlap	wm	0.5500774383544922
wm2max			0.6167959566872456

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	a8d930d5f10e6a1381dd2b1b4d7c1547
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.