MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2722076737141064
cnr4.645146122379485
efc0.5649756877944814
fber95.2838363647461
fwhmavg3.7958233333333333
fwhmx3.67904
fwhmy4.02479
fwhmz3.68364
icvscsf0.2022370744764943
icvsgm0.46321691430403267
icvswm0.334546011219473
inumed1.1219723224639893
inurange0.327939224243164
qi10.0
qi20.0007390411446331779
rpvecsf29.33756889045947
rpvegm14.298433842278271
rpvewm22.868661810451588
sizex180
sizey256
sizez256
snrcsf2.4537864862974565
snrgm10.394378603925764
snrtotal10.556051648786491
snrwm18.819989856136253
snrdcsf13.756204772938155
snrdgm31.012774027308833
snrdtotal31.52598952112382
snrdwm49.80898976312447
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.9445973236201719
summarybgmad13.153180122375488
summarybgmean49.8298454284668
summarybgmedian48.599735260009766
summarybgn2936683.0
summarybgp0530.064423179626466
summarybgp9573.98093795776366
summarybgstdv13.726670265197754
summarycsfk-0.07861302309525486
summarycsfmad126.40147399902344
summarycsfmean281.444091796875
summarycsfmedian276.1834716796875
summarycsfn8122.0
summarycsfp05111.48371505737305
summarycsfp95465.75429687499997
summarycsfstdv112.54706573486328
summarygmk0.2355882602283863
summarygmmad57.830718994140625
summarygmmean623.3633422851562
summarygmmedian622.643798828125
summarygmn29727.0
summarygmp05525.7082946777343
summarygmp95724.4738586425781
summarygmstdv59.90096664428711
summarywmk1.4170340838813429
summarywmmad44.89278793334961
summarywmmean996.3038940429688
summarywmmedian1000.015625
summarywmn142606.0
summarywmp05899.0380554199219
summarywmp951075.140380859375
summarywmstdv53.13563537597656
tpmoverlapcsf0.2217210829257965
tpmoverlapgm0.5399011373519897
tpmoverlapwm0.5500774383544922
wm2max0.6167959566872456

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5suma8d930d5f10e6a1381dd2b1b4d7c1547
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.